Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015821185.1_cds_XP_016500674.1_14482
CDS Infomation

[gene=LOC107819108] [db_xref=GeneID:107819108] [protein=probable beta-1,4-xylosyltransferase IRX9H isoform X1] [protein_id=XP_016500674.1] [location=complement(join(229304..229471,229625..229874,232175..233091))] [gbkey=CDS]
Sequence

ATGGCTTCAATTAGAAGAGCATTGTCCCCAGTACCTCGCCCGGGGAATAGAATTAATGGA
GAAGCATGTTCTGTTGCGTCTCCATTGTCCAAGTCATCGTCGTGTAATCAAAGTTATACA
CCAGCTGCAGGGTTTCTGTATTCTTATTTTGGTTCATTGGATTATGCATTCTATAAAGTT
CGGACATTTGTAGTTGGTATTTTGTCGCGAAGATCATCTAGGCCATTAGAGAGGTCAAAG
TTAAAGGGCCAAATTTGGAGGAAAGCACTTCTCCAATTTTTAATGTGCTTTGTTCTTGGA
GTTTTTATTGGCCTCACTCCATTTGTTTCTCTGAATTTGTCAGCAAATGTAATGTCGAAA
CATAAAACTTTCTCCTTTGAGGTGTTCCACCCTTACGAAAATGGCAGCTTATTTGCTGAT
GTGTCTAGAAATATGACATCAACTGTAAACAGTTCGGATTTCCTTGATAATTCTACGTCA
AGGACTAATTTAATATACAGTGAATTGAAAGCTGAAACTGCCGTCAATGTGTCTGATAAC
CAATCGCTGGATCAAGATTTGACGGTGTCCAGAAAACTTTTGATCATTGTGACGCCAACA
GAAGCACGGTCATTTCAAGCTTACTATCTAAACCATTTGGCCCATGTATTAAAATTAGTC
CCGCCTCCTTTGTTGTGGATAGTCGTGGAGATGGACTTTCAGTCAACAGAGACAGCTAAT
ATATTGAGGAGAACTGGAGTTATGTACAGGCATCTCGTATGCAAGAAGAACTCAACCGAA
GTAAAGGATAAAAGTGTGAACCTAAGGAATGTGGCACTAAACCACATTGAAACACACCGT
CTTGATGGGATTGTTTACTTCGCAGATGATTCCAACATATACTCAATAGATGTCTTTGAA
CAAATGCGGCAGATCAGCCGGTTCGGGACATGGGTTGTGGCAAGACTAGCTGAAAATAAT
AGGAAAGTTATCTTGCAGGGTCCAATCTGTAATGGCTCTCAGGTTATAGGTTGGCATACA
GATGGAGCGGCAAAAAGATTCCAGAGATTCTACGCCGAGATATCAGGATTTGCATTCAAT
AGTACAGTACTTTGGGATCCAATGAGGTGGAATCAGCCAACACTAGAGCCCATTAGGCAG
CTCGATATAGTTAAAGGTGGCTTCCAAGTGAGCTCATTTATTGAACAAGTTGTGGAAGAT
GAAAGCCAAATGGAATGCTTTCCGACGCACTGCTCAAGAATCATGGTTTGGCAATTTGAC
ACAGAACTGCTCTATCCGTACCCTCATGAGTGGTGGGTAAAGAATTACTCAGGCACTATT
ACTGCAAGTGTGTGA

Peptide Sequence

PEP ID

XP_016500674.1
PEP Infomation

PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Nicotiana tabacum]
Sequence

MASIRRALSPVPRPGNRINGEACSVASPLSKSSSCNQSYTPAAGFLYSYFGSLDYAFYKV
RTFVVGILSRRSSRPLERSKLKGQIWRKALLQFLMCFVLGVFIGLTPFVSLNLSANVMSK
HKTFSFEVFHPYENGSLFADVSRNMTSTVNSSDFLDNSTSRTNLIYSELKAETAVNVSDN
QSLDQDLTVSRKLLIIVTPTEARSFQAYYLNHLAHVLKLVPPPLLWIVVEMDFQSTETAN
ILRRTGVMYRHLVCKKNSTEVKDKSVNLRNVALNHIETHRLDGIVYFADDSNIYSIDVFE
QMRQISRFGTWVVARLAENNRKVILQGPICNGSQVIGWHTDGAAKRFQRFYAEISGFAFN
STVLWDPMRWNQPTLEPIRQLDIVKGGFQVSSFIEQVVEDESQMECFPTHCSRIMVWQFD
TELLYPYPHEWWVKNYSGTITASV

Transcript Sequence

Gene sequence data has not been registered.